Workbench Command is a set of command-line tools that can be used to perform simple and complex operations within Connectome Workbench.
WRITE INDEX TO ELEMENT MAPPING AS TEXT
wb_command -cifti-export-dense-mapping
<cifti> - the cifti file
<direction> - which direction to export the mapping from, ROW or COLUMN
[-volume-all] - export the the mapping of all voxels
<text-out> - output - the output text file
[-no-cifti-index] - don't write the cifti index in the output file
[-structure] - write the structure each voxel belongs to in the output
file
[-surface] - repeatable - export the the mapping of one surface structure
<structure> - the structure to output
<text-out> - output - the output text file
[-no-cifti-index] - don't write the cifti index in the output file
[-volume] - repeatable - export the the mapping of one volume structure
<structure> - the structure to output
<text-out> - output - the output text file
[-no-cifti-index] - don't write the cifti index in the output file
This command produces text files that describe the mapping from cifti
indices to surface vertices or voxels. All indices are zero-based. The
default format for -surface is lines of the form:
<cifti-index> <vertex>
The default format for -volume and -volume-all is lines of the form:
<cifti-index> <i> <j> <k>
For each <structure> argument, use one of the following strings:
CORTEX_LEFT
CORTEX_RIGHT
CEREBELLUM
ACCUMBENS_LEFT
ACCUMBENS_RIGHT
ALL_GREY_MATTER
ALL_WHITE_MATTER
AMYGDALA_LEFT
AMYGDALA_RIGHT
BRAIN_STEM
CAUDATE_LEFT
CAUDATE_RIGHT
CEREBELLAR_WHITE_MATTER_LEFT
CEREBELLAR_WHITE_MATTER_RIGHT
CEREBELLUM_LEFT
CEREBELLUM_RIGHT
CEREBRAL_WHITE_MATTER_LEFT
CEREBRAL_WHITE_MATTER_RIGHT
CORTEX
DIENCEPHALON_VENTRAL_LEFT
DIENCEPHALON_VENTRAL_RIGHT
HIPPOCAMPUS_LEFT
HIPPOCAMPUS_RIGHT
INVALID
OTHER
OTHER_GREY_MATTER
OTHER_WHITE_MATTER
PALLIDUM_LEFT
PALLIDUM_RIGHT
PUTAMEN_LEFT
PUTAMEN_RIGHT
THALAMUS_LEFT
THALAMUS_RIGHT