HCP Pipelines Reference

The HCP Pipelines are a set of tools (primarily, but not exclusively, shell scripts) for processing MRI images for the Human Connectome Project.

Pipeline scripts implement the Minimal Preprocessing Pipeline (MPP) described in Glasser et al. 2013 (including structural processing by FreeSurfer), single and multi-run ICA-FIX cleaning of fMRI data, task analysis using FEAT, diffusion analysis using bedpostX and 7T data processing.

Download HCP Pipelines from Github

HCP Pipelines Releases


Documentation, release notes, and answers to frequently asked questions can be found on our Github Repository: