Workbench Command is a set of command-line tools that can be used to perform simple and complex operations within Connectome Workbench.
CREATE A CIFTI LABEL FILE
wb_command -cifti-create-label
<cifti-out> - output - the output cifti file
[-volume] - volume component
<label-volume> - label volume file containing the data to be copied
<structure-label-volume> - label volume file that defines which voxels
to use
[-left-label] - label file for the left cortical surface
<label> - the label file
[-roi-left] - roi of vertices to use from left surface
<roi-metric> - the ROI as a metric file
[-right-label] - label file for the right cortical surface
<label> - the label file
[-roi-right] - roi of vertices to use from right surface
<roi-metric> - the ROI as a metric file
[-cerebellum-label] - label file for the cerebellum
<label> - the label file
[-roi-cerebellum] - roi of vertices to use from right surface
<roi-metric> - the ROI as a metric file
[-label] - repeatable - label for a specified surface structure
<structure> - the structure name
<label> - the label file
[-roi] - roi of vertices to use from this structure
<roi-metric> - the ROI as a metric file
All input files must have the same number of columns/subvolumes. Only
the specified components will be in the output cifti. At least one
component must be specified.
The -volume option requires two volume arguments, the label-volume
argument contains all labels you want to display (e.g. nuclei of the
thalamus), whereas the structure-label-volume argument contains all CIFTI
voxel-based structures you want to include data within (e.g.
THALAMUS_LEFT, THALAMUS_RIGHT, etc). See -volume-label-import and
-volume-help for format details of label volume files. If you just want
the labels in voxels to be the structure names, you may use the same file
for both arguments. The structure-label-volume must use some of the
label names from this list, all other label names in the
structure-label-volume will be ignored:
CORTEX_LEFT
CORTEX_RIGHT
CEREBELLUM
ACCUMBENS_LEFT
ACCUMBENS_RIGHT
ALL_GREY_MATTER
ALL_WHITE_MATTER
AMYGDALA_LEFT
AMYGDALA_RIGHT
BRAIN_STEM
CAUDATE_LEFT
CAUDATE_RIGHT
CEREBELLAR_WHITE_MATTER_LEFT
CEREBELLAR_WHITE_MATTER_RIGHT
CEREBELLUM_LEFT
CEREBELLUM_RIGHT
CEREBRAL_WHITE_MATTER_LEFT
CEREBRAL_WHITE_MATTER_RIGHT
CORTEX
DIENCEPHALON_VENTRAL_LEFT
DIENCEPHALON_VENTRAL_RIGHT
HIPPOCAMPUS_LEFT
HIPPOCAMPUS_RIGHT
HIPPOCAMPUS_DENTATE_LEFT
HIPPOCAMPUS_DENTATE_RIGHT
INVALID
OTHER
OTHER_GREY_MATTER
OTHER_WHITE_MATTER
PALLIDUM_LEFT
PALLIDUM_RIGHT
PUTAMEN_LEFT
PUTAMEN_RIGHT
THALAMUS_LEFT
THALAMUS_RIGHT