Workbench Command is a set of command-line tools that can be used to perform simple and complex operations within Connectome Workbench.
CREATE A CIFTI LABEL FILE wb_command -cifti-create-label <cifti-out> - output - the output cifti file [-volume] - volume component <label-volume> - label volume file containing the data to be copied <structure-label-volume> - label volume file that defines which voxels to use [-left-label] - label file for left surface <label> - the label file [-roi-left] - roi of vertices to use from left surface <roi-metric> - the ROI as a metric file [-right-label] - label for left surface <label> - the label file [-roi-right] - roi of vertices to use from right surface <roi-metric> - the ROI as a metric file [-cerebellum-label] - label for the cerebellum <label> - the label file [-roi-cerebellum] - roi of vertices to use from right surface <roi-metric> - the ROI as a metric file All input files must have the same number of columns/subvolumes. Only the specified components will be in the output cifti. At least one component must be specified. The -volume option requires two volume arguments, the label-volume argument contains all labels you want to display (e.g. nuclei of the thalamus), whereas the structure-label-volume argument contains all CIFTI voxel-based structures you want to include data within (e.g. THALAMUS_LEFT, THALAMUS_RIGHT, etc). See -volume-label-import and -volume-help for format details of label volume files. If you just want the labels in voxels to be the structure names, you may use the same file for both arguments. The structure-label-volume must use some of the label names from this list, all other label names in the structure-label-volume will be ignored: CORTEX_LEFT CORTEX_RIGHT CEREBELLUM ACCUMBENS_LEFT ACCUMBENS_RIGHT ALL_GREY_MATTER ALL_WHITE_MATTER AMYGDALA_LEFT AMYGDALA_RIGHT BRAIN_STEM CAUDATE_LEFT CAUDATE_RIGHT CEREBELLAR_WHITE_MATTER_LEFT CEREBELLAR_WHITE_MATTER_RIGHT CEREBELLUM_LEFT CEREBELLUM_RIGHT CEREBRAL_WHITE_MATTER_LEFT CEREBRAL_WHITE_MATTER_RIGHT CORTEX DIENCEPHALON_VENTRAL_LEFT DIENCEPHALON_VENTRAL_RIGHT HIPPOCAMPUS_LEFT HIPPOCAMPUS_RIGHT INVALID OTHER OTHER_GREY_MATTER OTHER_WHITE_MATTER PALLIDUM_LEFT PALLIDUM_RIGHT PUTAMEN_LEFT PUTAMEN_RIGHT THALAMUS_LEFT THALAMUS_RIGHT