Using Workbench Command

Workbench Command is a set of command-line tools that can be used to perform simple and complex operations within Connectome Workbench.

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   wb_command -cifti-create-parcellated-from-template
      <cifti-template> - a cifti file with the template parcel mapping along
      <modify-direction> - which dimension of the output file should match the
         template (integer, 'ROW', or 'COLUMN')
      <cifti-out> - output - the output cifti file

      [-fill-value] - specify value to be used in parcels that don't match
         <value> - value to use (default 0)

      [-cifti] - repeatable - specify an input cifti file
         <cifti-in> - the input parcellated cifti file

      For each parcel name in the template mapping, find that name in an input
      cifti file and use its data in the output file.  All input cifti files
      must have a parcels mapping along <modify-direction> and matching
      mappings along other dimensions.  The direction can be either an integer
      starting from 1, or the strings 'ROW' or 'COLUMN'.