Workbench Command is a set of command-line tools that can be used to perform simple and complex operations within Connectome Workbench.
DILATE A CIFTI FILE
wb_command -cifti-dilate
<cifti-in> - the input cifti file
<direction> - which dimension to dilate along, ROW or COLUMN
<surface-distance> - the distance to dilate on surfaces, in mm
<volume-distance> - the distance to dilate in the volume, in mm
<cifti-out> - output - the output cifti file
[-left-surface] - specify the left surface to use
<surface> - the left surface file
[-left-corrected-areas] - vertex areas to use instead of computing
them from the left surface
<area-metric> - the corrected vertex areas, as a metric
[-right-surface] - specify the right surface to use
<surface> - the right surface file
[-right-corrected-areas] - vertex areas to use instead of computing
them from the right surface
<area-metric> - the corrected vertex areas, as a metric
[-cerebellum-surface] - specify the cerebellum surface to use
<surface> - the cerebellum surface file
[-cerebellum-corrected-areas] - vertex areas to use instead of
computing them from the cerebellum surface
<area-metric> - the corrected vertex areas, as a metric
[-bad-brainordinate-roi] - specify an roi of brainordinates to overwrite,
rather than zeros
<roi-cifti> - cifti dscalar or dtseries file, positive values denote
brainordinates to have their values replaced
[-nearest] - use nearest good value instead of a weighted average
[-merged-volume] - treat volume components as if they were a single
component
[-legacy-mode] - use the math from v1.3.2 and earlier for weighted
dilation
For all data values designated as bad, if they neighbor a good value or
are within the specified distance of a good value in the same kind of
model, replace the value with a distance weighted average of nearby good
values, otherwise set the value to zero. If -nearest is specified, it
will use the value from the closest good value within range instead of a
weighted average. When the input file contains label data, nearest
dilation is used on the surface, and weighted popularity is used in the
volume.
The -*-corrected-areas options are intended for dilating on group average
surfaces, but it is only an approximate correction for the reduction of
structure in a group average surface.
If -bad-brainordinate-roi is specified, all values, including those with
value zero, are good, except for locations with a positive value in the
ROI. If it is not specified, only values equal to zero are bad.