Workbench Command is a set of command-line tools that can be used to perform simple and complex operations within Connectome Workbench.
REPLACE DATA IN A STRUCTURE IN A CIFTI FILE
wb_command -cifti-replace-structure
<cifti> - the cifti to modify
<direction> - which dimension to interpret as a single map, ROW or COLUMN
[-volume-all] - replace the data in all volume components
<volume> - the input volume
[-from-cropped] - the input is cropped to the size of the data
[-discard-unused-labels] - when operating on a dlabel file, drop any
unused label keys from the label table
[-label-collision] - how to handle conflicts between label keys
<action> - 'ERROR', 'LEFT_SURFACE_FIRST', or 'LEGACY', default
'ERROR', use 'LEGACY' to match v1.4.2 and earlier
[-label] - repeatable - replace the data in a surface label component
<structure> - the structure to replace the data of
<label> - the input label file
[-metric] - repeatable - replace the data in a surface component
<structure> - the structure to replace the data of
<metric> - the input metric
[-volume] - repeatable - replace the data in a volume component
<structure> - the structure to replace the data of
<volume> - the input volume
[-from-cropped] - the input is cropped to the size of the component
This is a fairly low-level command, you probably want to use
-cifti-create-dense-from-template instead.
You must specify at least one of -metric, -label, -volume, or -volume-all
for this command to do anything. Input volumes must line up with the
output of -cifti-separate. For dtseries/dscalar, use COLUMN, and if your
dconn matrix will be fully symmetric, COLUMN is more efficient. The
-volume-all option must not be specified when using a -volume option. A
-metric option must not be specified when using a -label option, and is
not recommended on a label-type cifti file. For each <structure>
argument, use one of the following strings:
CORTEX_LEFT
CORTEX_RIGHT
CEREBELLUM
ACCUMBENS_LEFT
ACCUMBENS_RIGHT
ALL_GREY_MATTER
ALL_WHITE_MATTER
AMYGDALA_LEFT
AMYGDALA_RIGHT
BRAIN_STEM
CAUDATE_LEFT
CAUDATE_RIGHT
CEREBELLAR_WHITE_MATTER_LEFT
CEREBELLAR_WHITE_MATTER_RIGHT
CEREBELLUM_LEFT
CEREBELLUM_RIGHT
CEREBRAL_WHITE_MATTER_LEFT
CEREBRAL_WHITE_MATTER_RIGHT
CORTEX
DIENCEPHALON_VENTRAL_LEFT
DIENCEPHALON_VENTRAL_RIGHT
HIPPOCAMPUS_LEFT
HIPPOCAMPUS_RIGHT
HIPPOCAMPUS_DENTATE_LEFT
HIPPOCAMPUS_DENTATE_RIGHT
INVALID
OTHER
OTHER_GREY_MATTER
OTHER_WHITE_MATTER
PALLIDUM_LEFT
PALLIDUM_RIGHT
PUTAMEN_LEFT
PUTAMEN_RIGHT
THALAMUS_LEFT
THALAMUS_RIGHT