Workbench Command is a set of command-line tools that can be used to perform simple and complex operations within Connectome Workbench.
EXCLUDE BRAINORDINATES FROM A CIFTI FILE wb_command -cifti-restrict-dense-map <cifti-in> - the input cifti <direction> - which dimension to change the mapping on (integer, 'ROW', or 'COLUMN') <cifti-out> - output - the output cifti [-cifti-roi] - cifti file containing combined rois <roi-cifti> - the rois as a cifti file [-left-roi] - vertices to use from left hemisphere <roi-metric> - the left roi as a metric file [-right-roi] - vertices to use from right hemisphere <roi-metric> - the right roi as a metric file [-cerebellum-roi] - vertices to use from cerebellum <roi-metric> - the cerebellum roi as a metric file [-vol-roi] - voxels to use <roi-vol> - the roi volume file Writes a modified version of <cifti-in>, where all brainordinates outside the specified roi(s) are removed from the file. The direction can be either an integer starting from 1, or the strings 'ROW' or 'COLUMN'. If -cifti-roi is specified, no other -*-roi option may be specified. If not using -cifti-roi, any -*-roi options not present will discard the relevant structure, if present in the input file.