Using Workbench Command

Workbench Command is a set of command-line tools that can be used to perform simple and complex operations within Connectome Workbench.

Full Documentation:

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TRANSPOSE A CIFTI FILE
   wb_command -cifti-transpose
      <cifti-in> - the input cifti file
      <cifti-out> - output - the output cifti file

      [-mem-limit] - restrict memory usage
         <limit-GB> - memory limit in gigabytes

      The input must be a 2-dimensional cifti file.  The output is a cifti file
      where every row in the input is a column in the output.