Workbench Command is a set of command-line tools that can be used to perform simple and complex operations within Connectome Workbench.
SET THE PALETTE OF A VOLUME FILE wb_command -volume-palette <volume> - the volume file to modify <mode> - the mapping mode [-subvolume] - select a single subvolume <subvolume> - the subvolume number or name [-pos-percent] - percentage min/max for positive data coloring <pos-min-%> - the percentile for the least positive data <pos-max-%> - the percentile for the most positive data [-neg-percent] - percentage min/max for negative data coloring <neg-min-%> - the percentile for the least negative data <neg-max-%> - the percentile for the most negative data [-pos-user] - user min/max values for positive data coloring <pos-min-user> - the value for the least positive data <pos-max-user> - the value for the most positive data [-neg-user] - user min/max values for negative data coloring <neg-min-user> - the value for the least negative data <neg-max-user> - the value for the most negative data [-interpolate] - interpolate colors <interpolate> - boolean, whether to interpolate [-disp-pos] - display positive data <display> - boolean, whether to display [-disp-neg] - display positive data <display> - boolean, whether to display [-disp-zero] - display data closer to zero than the min cutoff <display> - boolean, whether to display [-palette-name] - set the palette used <name> - the name of the palette [-thresholding] - set the thresholding <type> - thresholding setting <test> - show values inside or outside thresholds <min> - lower threshold <max> - upper threshold [-inversion] - specify palette inversion <type> - the type of inversion The original volume file is overwritten with the modified version. By default, all columns of the volume file are adjusted to the new settings, use the -subvolume option to change only one subvolume. Mapping settings not specified in options will be taken from the first subvolume. The <mode> argument must be one of the following: MODE_AUTO_SCALE MODE_AUTO_SCALE_ABSOLUTE_PERCENTAGE MODE_AUTO_SCALE_PERCENTAGE MODE_USER_SCALE The <name> argument to -palette-name must be one of the following: ROY-BIG-BL videen_style Gray_Interp_Positive Gray_Interp PSYCH-FIXED RBGYR20 RBGYR20P RYGBR4_positive RGRBR_mirror90_pos Orange-Yellow POS_NEG_ZERO red-yellow blue-lightblue FSL power_surf black-red black-green black-blue black-red-positive black-green-positive black-blue-positive blue-black-green blue-black-red red-black-green fsl_red fsl_green fsl_blue fsl_yellow RedWhiteBlue cool-warm spectral RY-BC-BL magma JET256 PSYCH PSYCH-NO-NONE ROY-BIG clear_brain fidl raich4_clrmid raich6_clrmid HSB8_clrmid POS_NEG Special-RGB-Volume The <type> argument to -thresholding must be one of the following: THRESHOLD_TYPE_OFF THRESHOLD_TYPE_NORMAL THRESHOLD_TYPE_FILE The <test> argument to -thresholding must be one of the following: THRESHOLD_TEST_SHOW_OUTSIDE THRESHOLD_TEST_SHOW_INSIDE The <type> argument to -inversion must be one of the following: OFF POSITIVE_WITH_NEGATIVE POSITIVE_NEGATIVE_SEPARATE