Workbench Command is a set of command-line tools that can be used to perform simple and complex operations within Connectome Workbench.
PERFORM REDUCTION OPERATION ACROSS SUBVOLUMES wb_command -volume-reduce <volume-in> - the volume file to reduce <operation> - the reduction operator to use <volume-out> - output - the output volume [-exclude-outliers] - exclude non-numeric values and outliers by standard deviation <sigma-below> - number of standard deviations below the mean to include <sigma-above> - number of standard deviations above the mean to include [-only-numeric] - exclude non-numeric values For each voxel, takes the data across subvolumes as a vector, and performs the specified reduction on it, putting the result into the single output volume at that voxel. The reduction operators are as follows: MAX: the maximum value MIN: the minimum value INDEXMAX: the 1-based index of the maximum value INDEXMIN: the 1-based index of the minimum value SUM: add all values PRODUCT: multiply all values MEAN: the mean of the data STDEV: the standard deviation (N denominator) SAMPSTDEV: the sample standard deviation (N-1 denominator) VARIANCE: the variance of the data TSNR: mean divided by sample standard deviation (N-1 denominator) COV: sample standard deviation (N-1 denominator) divided by mean L2NORM: square root of sum of squares MEDIAN: the median of the data MODE: the mode of the data COUNT_NONZERO: the number of nonzero elements in the data